jpayne@0: jpayne@0: into a multi-sample VCF with consensus SNPs jpayne@0: jpayne@62: quay.io/staphb/cfsan-snp-pipeline jpayne@61: bcftools jpayne@58: bzip2 jpayne@58: snp-pipeline jpayne@58: tabix jpayne@61: htslib jpayne@58: jpayne@0: jpayne@0: ./file jpayne@0: && cat ./file jpayne@56: && cfsan_snp_pipeline merge_vcfs ./file jpayne@0: ]]> jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@50: jpayne@0: jpayne@0: jpayne@0: http://snp-pipeline.readthedocs.io/en/latest/index.html jpayne@0: ]]> jpayne@0: jpayne@0: 10.7717/peerj-cs.20 jpayne@0: jpayne@0: