jpayne@0: jpayne@0: into a multi-sample VCF with consensus SNPs jpayne@0: jpayne@30: samtools jpayne@19: bcftools jpayne@12: bzip2 jpayne@0: snp-pipeline jpayne@0: tabix jpayne@10: python3 jpayne@0: jpayne@0: ./file jpayne@0: && cat ./file jpayne@0: && cfsan_snp_pipeline merge_vcfs ./file jpayne@0: ]]> jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: http://snp-pipeline.readthedocs.io/en/latest/index.html jpayne@0: ]]> jpayne@0: jpayne@0: 10.7717/peerj-cs.20 jpayne@0: jpayne@0: