jpayne@0: sample="sample1" jpayne@0: fastqFileList="sample1_1.fastq, sample1_2.fastq" jpayne@0: fastqFileSize=4818902 jpayne@0: machine= jpayne@0: flowcell= jpayne@0: numberReads=20000 jpayne@0: numberDupReads=110 jpayne@0: percentReadsMapped=94.55 jpayne@0: aveInsertSize=286.84 jpayne@0: avePileupDepth=23.22 jpayne@0: phase1Snps=46 jpayne@0: phase1SnpsPreserved=32 jpayne@0: snps=46 jpayne@0: snpsPreserved=32 jpayne@0: missingPos=0 jpayne@0: missingPosPreserved=0 jpayne@0: excludedSample= jpayne@0: excludedSamplePreserved= jpayne@0: errorList=""