# HG changeset patch
# User jpayne
# Date 1517423031 18000
# Node ID 05f2f9e58b3f050763d272a03afde83bd1bcf8d2
# Parent  f986ff235d696af67a44cb4bfe9978c5a9d60107
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

diff -r f986ff235d69 -r 05f2f9e58b3f 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Wed Jan 31 13:13:17 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 13:23:51 2018 -0500
@@ -8,8 +8,9 @@
         <requirement type="package" version="3.4">python3</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:\$CONDA_DEFAULT/lib" &&
         env &&
-        export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:\$CONDA_DEFAULT/lib" &&
+        ls -lah \$CONDA_DEFAULT &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf