# HG changeset patch
# User jpayne
# Date 1517423672 18000
# Node ID 1d77f9fb51f37ada4d4fa95c50ff6d7d70873701
# Parent  1044c9a132c52b9f920cca201e56728937764e26
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

diff -r 1044c9a132c5 -r 1d77f9fb51f3 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Wed Jan 31 13:24:56 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 13:34:32 2018 -0500
@@ -8,9 +8,10 @@
         <requirement type="package" version="3.4">python3</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:\$CONDA_DEFAULT_ENV/lib" &&
+        export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
         env &&
         ls -lah \$CONDA_DEFAULT_ENV &&
+        ls -lah \$CONDA_DEFAULT_ENV\lib &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf