# HG changeset patch
# User jpayne
# Date 1517252179 18000
# Node ID 62191abf542687955277b04ee1290fe88b799e10
# Parent  5191246bc2e23bcfbce2165cd6fd684a9c659267
planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty

diff -r 5191246bc2e2 -r 62191abf5426 1_map_reads.xml
--- a/1_map_reads.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/1_map_reads.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -3,6 +3,7 @@
     <requirements>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $reads.reads_select == 'collection'
diff -r 5191246bc2e2 -r 62191abf5426 2_call_sites.xml
--- a/2_call_sites.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/2_call_sites.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -7,6 +7,7 @@
         <requirement type="package">picard</requirement>
         <requirement type="package">varscan</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     $__tool_directory__/snp-cache.py snp_sitecalls 
diff -r 5191246bc2e2 -r 62191abf5426 3_filter_regions.xml
--- a/3_filter_regions.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/3_filter_regions.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -5,6 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p ./samples/sample/                      &&
diff -r 5191246bc2e2 -r 62191abf5426 4_merge_sites.xml
--- a/4_merge_sites.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/4_merge_sites.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -4,6 +4,7 @@
         <requirement type="package" version="2.2.6">bowtie2</requirement>
         <requirement type="package" version="1.2">samtools</requirement>
         <requirement type="package">snp-pipeline</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         $__tool_directory__/snp-wind.py ./
diff -r 5191246bc2e2 -r 62191abf5426 5_call_consensus.xml
--- a/5_call_consensus.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/5_call_consensus.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -3,6 +3,7 @@
     <requirements>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #set $identifier = $call_pileup.name.split(' ')[0]
diff -r 5191246bc2e2 -r 62191abf5426 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/6_merge_vcfs.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -4,6 +4,7 @@
         <requirement type="package" version="1.3.1">bcftools</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
diff -r 5191246bc2e2 -r 62191abf5426 7_smp_matrix.xml
--- a/7_smp_matrix.xml	Thu Jan 25 13:55:20 2018 -0500
+++ b/7_smp_matrix.xml	Mon Jan 29 13:56:19 2018 -0500
@@ -3,6 +3,7 @@
     <requirements>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
+        <requirement type="package">package_python_3_5</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"