# HG changeset patch
# User jpayne
# Date 1517598317 18000
# Node ID 69216317baa79fcebb76093146e6a56e78157a9a
# Parent  e6ec3c848b3206939c867e9446970faa6c1bca18
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

diff -r e6ec3c848b32 -r 69216317baa7 1_map_reads.xml
--- a/1_map_reads.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/1_map_reads.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $reads.reads_select == 'collection'
diff -r e6ec3c848b32 -r 69216317baa7 2_call_sites.xml
--- a/2_call_sites.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/2_call_sites.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -7,7 +7,7 @@
         <requirement type="package">picard</requirement>
         <requirement type="package">varscan</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/snp-cache.py snp_sitecalls 
diff -r e6ec3c848b32 -r 69216317baa7 3_filter_regions.xml
--- a/3_filter_regions.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/3_filter_regions.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p ./samples/sample/                      &&
diff -r e6ec3c848b32 -r 69216317baa7 4_merge_sites.xml
--- a/4_merge_sites.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/4_merge_sites.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.2">samtools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python $__tool_directory__/snp-wind.py ./
diff -r e6ec3c848b32 -r 69216317baa7 5_call_consensus.xml
--- a/5_call_consensus.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/5_call_consensus.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #set $identifier = $call_pileup.name.split(' ')[0]
diff -r e6ec3c848b32 -r 69216317baa7 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/6_merge_vcfs.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
         <requirement type="package" version="1.6">htslib</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
diff -r e6ec3c848b32 -r 69216317baa7 7_smp_matrix.xml
--- a/7_smp_matrix.xml	Fri Feb 02 11:58:19 2018 -0500
+++ b/7_smp_matrix.xml	Fri Feb 02 14:05:17 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"