# HG changeset patch
# User jpayne
# Date 1517529695 18000
# Node ID 87f53c4a13df311817d5c4f8b4844666aba109f0
# Parent  b6bc9158666c5a9eadd77bdc754e189a589bda57
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

diff -r b6bc9158666c -r 87f53c4a13df 1_map_reads.xml
--- a/1_map_reads.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/1_map_reads.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $reads.reads_select == 'collection'
diff -r b6bc9158666c -r 87f53c4a13df 2_call_sites.xml
--- a/2_call_sites.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/2_call_sites.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -7,7 +7,7 @@
         <requirement type="package">picard</requirement>
         <requirement type="package">varscan</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/snp-cache.py snp_sitecalls 
diff -r b6bc9158666c -r 87f53c4a13df 3_filter_regions.xml
--- a/3_filter_regions.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/3_filter_regions.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p ./samples/sample/                      &&
diff -r b6bc9158666c -r 87f53c4a13df 4_merge_sites.xml
--- a/4_merge_sites.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/4_merge_sites.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.2">samtools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package">snp-pipeline</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python $__tool_directory__/snp-wind.py ./
diff -r b6bc9158666c -r 87f53c4a13df 5_call_consensus.xml
--- a/5_call_consensus.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/5_call_consensus.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #set $identifier = $call_pileup.name.split(' ')[0]
diff -r b6bc9158666c -r 87f53c4a13df 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/6_merge_vcfs.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
         <requirement type="package" version="1.6">htslib</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
diff -r b6bc9158666c -r 87f53c4a13df 7_smp_matrix.xml
--- a/7_smp_matrix.xml	Thu Feb 01 17:46:04 2018 -0500
+++ b/7_smp_matrix.xml	Thu Feb 01 19:01:35 2018 -0500
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
-        <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="3.5">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"