# HG changeset patch
# User jpayne
# Date 1517422107 18000
# Node ID cf6f7548f15afefd071b5256be41891e525f2e32
# Parent  43113449a74f792f94b0b8a2a2817be679a8cccf
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

diff -r 43113449a74f -r cf6f7548f15a 6_merge_vcfs.xml
--- a/6_merge_vcfs.xml	Wed Jan 31 13:01:06 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 13:08:27 2018 -0500
@@ -9,6 +9,7 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
+        export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$CONDA_DEFAULT/lib" &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf