# HG changeset patch # User jpayne # Date 1557259312 14400 # Node ID d273453b30bb0122f7889b2f59f0da7f1e6fd59d # Parent f58616a4b2f3aebd60429dd1e55ecd410e543367 planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty diff -r f58616a4b2f3 -r d273453b30bb 1_map_reads.xml --- a/1_map_reads.xml Tue May 07 11:44:12 2019 -0400 +++ b/1_map_reads.xml Tue May 07 16:01:52 2019 -0400 @@ -4,7 +4,7 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="2.3.4">bowtie2</requirement> <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 2_call_sites.xml --- a/2_call_sites.xml Tue May 07 11:44:12 2019 -0400 +++ b/2_call_sites.xml Tue May 07 16:01:52 2019 -0400 @@ -7,7 +7,7 @@ <requirement type="package">picard</requirement> <requirement type="package">varscan</requirement> <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 3_filter_regions.xml --- a/3_filter_regions.xml Tue May 07 11:44:12 2019 -0400 +++ b/3_filter_regions.xml Tue May 07 16:01:52 2019 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 4_merge_sites.xml --- a/4_merge_sites.xml Tue May 07 11:44:12 2019 -0400 +++ b/4_merge_sites.xml Tue May 07 16:01:52 2019 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="1.2">samtools</requirement> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 5_call_consensus.xml --- a/5_call_consensus.xml Tue May 07 11:44:12 2019 -0400 +++ b/5_call_consensus.xml Tue May 07 16:01:52 2019 -0400 @@ -4,7 +4,7 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 6_merge_vcfs.xml --- a/6_merge_vcfs.xml Tue May 07 11:44:12 2019 -0400 +++ b/6_merge_vcfs.xml Tue May 07 16:01:52 2019 -0400 @@ -5,8 +5,8 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="0.2.5">tabix</requirement> - <requirement type="package" version="3.6">python</requirement> <requirement type="package" version="1.6">htslib</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && diff -r f58616a4b2f3 -r d273453b30bb 7_smp_matrix.xml --- a/7_smp_matrix.xml Tue May 07 11:44:12 2019 -0400 +++ b/7_smp_matrix.xml Tue May 07 16:01:52 2019 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="0.2.5">tabix</requirement> - <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="3.6.0">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&