Mercurial > repos > jpayne > snp_pipeline
changeset 33:b6bc9158666c
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author | jpayne |
---|---|
date | Thu, 01 Feb 2018 17:46:04 -0500 |
parents | e8b3f4f646b1 |
children | 87f53c4a13df |
files | 6_merge_vcfs.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/6_merge_vcfs.xml Thu Feb 01 16:20:17 2018 -0500 +++ b/6_merge_vcfs.xml Thu Feb 01 17:46:04 2018 -0500 @@ -11,7 +11,7 @@ <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && env && - ls -lah \$CONDA_DEFAULT_ENV && + ls -lah \$CONDA_DEFAULT_ENV/bin && ls -lah \$CONDA_DEFAULT_ENV/lib && python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" #for $vcf in $vcfs