snp_pipeline: eefdd97a6749

planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty

author	jpayne
date	Wed, 24 Jan 2018 14:18:21 -0500
parents
children	8d165c49673a
files	0_index_ref.xml.old 1_map_reads.xml 2_call_sites.xml 3_filter_regions.xml 4_merge_sites.xml 5_call_consensus.xml 6_merge_vcfs.xml 7_smp_matrix.xml CFSAN_SNP_Pipeline.ga snp-cache.py snp-filter.py snp-fuse.py snp-pipeline.xml.old snp-wind.py test-data/metrics.tsv test-data/reference/lambda_virus.fasta test-data/reference/lambda_virus.fasta.fai test-data/reference/reference.1.bt2 test-data/reference/reference.2.bt2 test-data/reference/reference.3.bt2 test-data/reference/reference.4.bt2 test-data/reference/reference.rev.1.bt2 test-data/reference/reference.rev.2.bt2 test-data/reference/reference.tar.gz test-data/referenceSNP.fasta test-data/samples/sample1/consensus.fasta test-data/samples/sample1/consensus.vcf test-data/samples/sample1/consensus_preserved.fasta test-data/samples/sample1/consensus_preserved.vcf test-data/samples/sample1/duplicate_reads_metrics.txt test-data/samples/sample1/metrics test-data/samples/sample1/reads.all.pileup test-data/samples/sample1/reads.sam test-data/samples/sample1/reads.sorted.bam test-data/samples/sample1/reads.sorted.deduped.bam test-data/samples/sample1/reads.unsorted.bam test-data/samples/sample1/sample1_1.fastq test-data/samples/sample1/sample1_2.fastq

Mercurial > repos > jpayne > snp_pipeline