|
jpayne@0
|
1 <tool id="table-sort" name="Sort tabular dataset" version="0.1.0">
|
|
jpayne@0
|
2 <description>on specified header or headers</description>
|
|
jpayne@0
|
3 <requirements>
|
|
jpayne@0
|
4 </requirements>
|
|
jpayne@0
|
5 <command detect_errors="exit_code"><![CDATA[
|
|
jpayne@0
|
6 cat $table | $__tool_directory__/table-sort.py $headers > $sorted
|
|
jpayne@0
|
7 ]]></command>
|
|
jpayne@0
|
8 <inputs>
|
|
jpayne@0
|
9 <param name="table" format="tsv" label="Table in TSV format to sort." type="data" />
|
|
jpayne@0
|
10 <param name="headers" type="text" label="Space-delimited list of headers on which to sort." />
|
|
jpayne@0
|
11 </inputs>
|
|
jpayne@0
|
12 <outputs>
|
|
jpayne@0
|
13 <data name="sorted" format="tsv" label="Sorted table" />
|
|
jpayne@0
|
14 </outputs>
|
|
jpayne@0
|
15 <tests>
|
|
jpayne@0
|
16 <test>
|
|
jpayne@0
|
17 <param name="table" value="combined.tsv" ftype="tsv" />
|
|
jpayne@0
|
18 <param name="headers" value="flavor" />
|
|
jpayne@0
|
19 <output name="sorted" value="sorted.tsv"/>
|
|
jpayne@0
|
20 </test>
|
|
jpayne@0
|
21 <test>
|
|
jpayne@0
|
22 <param name="table" value="sort_test_multiple.txt" ftype="tsv" />
|
|
jpayne@0
|
23 <param name="headers" value="A D" />
|
|
jpayne@0
|
24 <output name="sorted" value="sort_test_multiple_sorted.txt"/>
|
|
jpayne@0
|
25 </test>
|
|
jpayne@0
|
26 </tests>
|
|
jpayne@0
|
27 <help><![CDATA[
|
|
jpayne@0
|
28 Sort a table, ascending, by one or more rows.
|
|
jpayne@0
|
29 ]]></help>
|
|
jpayne@0
|
30
|
|
jpayne@0
|
31 <citations>
|
|
jpayne@0
|
32 </citations>
|
|
jpayne@0
|
33 </tool> |
