Mercurial > repos > jpayne > table_ops
annotate table-summary.xml @ 14:1af2524f48b7 tip
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| author | jpayne |
|---|---|
| date | Tue, 30 Oct 2018 16:18:02 -0400 |
| parents | 746091a78780 |
| children |
| rev | line source |
|---|---|
| jpayne@13 | 1 <tool id="table-summary" name="Summarize a tabular dataset" version="0.1.0"> |
| jpayne@13 | 2 <description>by counting unique values in columns</description> |
| jpayne@13 | 3 <requirements> |
| jpayne@13 | 4 <!-- <requirement type="package" version="3.4">python</requirement> --> |
| jpayne@13 | 5 </requirements> |
| jpayne@13 | 6 <command detect_errors="exit_code"><![CDATA[ |
| jpayne@13 | 7 python $__tool_directory__/table-summarize.py $table > $summary |
| jpayne@13 | 8 ]]></command> |
| jpayne@13 | 9 <inputs> |
| jpayne@13 | 10 <param name="table" type="data" format="tsv" /> |
| jpayne@13 | 11 </inputs> |
| jpayne@13 | 12 <outputs> |
| jpayne@13 | 13 <data name="summary" format="txt" label="Summary" /> |
| jpayne@13 | 14 </outputs> |
| jpayne@13 | 15 |
| jpayne@13 | 16 <tests> |
| jpayne@13 | 17 <test> |
| jpayne@13 | 18 <param name="table" value="summary_test.txt" /> |
| jpayne@13 | 19 <output name="summary" value="summary.txt" /> |
| jpayne@13 | 20 </test> |
| jpayne@13 | 21 </tests> |
| jpayne@13 | 22 <help><![CDATA[ |
| jpayne@13 | 23 Summarize tabular results by counting up unique values in columns. |
| jpayne@13 | 24 ]]></help> |
| jpayne@13 | 25 |
| jpayne@13 | 26 <citations> |
| jpayne@13 | 27 </citations> |
| jpayne@13 | 28 </tool> |