Mercurial > repos > jpayne > table_ops

comparison table-summarize.py @ 13:746091a78780

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planemo upload
author jpayne
date Fri, 09 Mar 2018 11:14:02 -0500
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12:15230438f7f5 13:746091a78780
1 #! /usr/bin/env python
2
3 from __future__ import print_function
4
5 import csv
6 import sys
7 from collections import Counter, OrderedDict
8
9 def main(table):
10 with open(table, 'rU') as table_f:
11 rdr = csv.DictReader(table_f, delimiter='\t', dialect='excel')
12 summary = OrderedDict()
13 data = list(rdr)
14 for name in rdr.fieldnames[1:]:
15 summary[name] = Counter([r[name] for r in data])
16 total = len(data)
17 print("Summary:")
18 for name, results in summary.items():
19 print('{}:'.format(name))
20 for result, num in results.items():
21 if result:
22 print("\t - {}: {} of {}".format(result, num, total))
23
24
25
26 if __name__ == '__main__':
27 main(sys.argv[1])