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"planemo upload"
author kkonganti
date Wed, 22 Jun 2022 17:20:27 -0400
parents 5860f4569cda
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2:5860f4569cda 3:91a82cbaf263
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 $__tool_directory__/process_centrifuge_output.py -o '$input1' -r '$input2' -b '$input3' -t processed-centrifuge-bug-ids.txt 8 $__tool_directory__/process_centrifuge_output.py -o '$input1' -r '$input2' -b '$input3' -t processed-centrifuge-bug-ids.txt
9 ]]></command> 9 ]]></command>
10 <inputs> 10 <inputs>
11 <param type="data" name="input1" format="txt" /> 11 <param label="Centrifuge Output" type="data" name="input1" format="txt" />
12 <param type="data" name="input2" format="txt" /> 12 <param label="Centrifuge Report (from --report-file)" type="data" name="input2" format="txt" />
13 <param type="text" name="input3" format="txt" /> 13 <param label="Bug name to extract read IDs by" type="text" name="input3" format="txt" />
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data name="output" format="txt" from_work_dir="processed-centrifuge-bug-ids.txt" /> 16 <data name="output" format="txt" from_work_dir="processed-centrifuge-bug-ids.txt" />
17 </outputs> 17 </outputs>
18 <tests> 18 <tests>