Mercurial > repos > kkonganti > cfsan_bettercallsal
annotate 0.6.1/modules/custom/dump_software_versions/main.nf @ 13:74baf1a6c3bd
"planemo upload"
| author | kkonganti |
|---|---|
| date | Tue, 05 Sep 2023 13:04:15 -0400 |
| parents | 749faef1caa9 |
| children |
| rev | line source |
|---|---|
| kkonganti@11 | 1 process DUMP_SOFTWARE_VERSIONS { |
| kkonganti@11 | 2 tag "${params.pipeline} software versions" |
| kkonganti@11 | 3 label 'process_pico' |
| kkonganti@11 | 4 |
| kkonganti@11 | 5 // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container |
| kkonganti@11 | 6 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) |
| kkonganti@11 | 7 conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null) |
| kkonganti@11 | 8 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? |
| kkonganti@11 | 9 'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' : |
| kkonganti@11 | 10 'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }" |
| kkonganti@11 | 11 |
| kkonganti@11 | 12 input: |
| kkonganti@11 | 13 path versions |
| kkonganti@11 | 14 |
| kkonganti@11 | 15 output: |
| kkonganti@11 | 16 path "software_versions.yml" , emit: yml |
| kkonganti@11 | 17 path "software_versions_mqc.yml", emit: mqc_yml |
| kkonganti@11 | 18 path "versions.yml" , emit: versions |
| kkonganti@11 | 19 |
| kkonganti@11 | 20 when: |
| kkonganti@11 | 21 task.ext.when == null || task.ext.when |
| kkonganti@11 | 22 |
| kkonganti@11 | 23 script: |
| kkonganti@11 | 24 def args = task.ext.args ?: '' |
| kkonganti@11 | 25 template 'dumpsoftwareversions.py' |
| kkonganti@11 | 26 } |