Mercurial > repos > kkonganti > cfsan_bettercallsal

annotate 0.6.1/LICENSE.md @ 16:b90e5a7a3d4f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload"
author kkonganti
date Thu, 07 Sep 2023 15:22:10 -0400
parents 749faef1caa9
children
rev   line source
kkonganti@11 1 # CPIPES (CFSAN PIPELINES)
kkonganti@11 2
kkonganti@11 3 ## The modular pipeline repository at CFSAN, FDA
kkonganti@11 4
kkonganti@11 5 **CPIPES** (CFSAN PIPELINES) is a collection of modular pipelines based on **NEXTFLOW**,
kkonganti@11 6 mostly for bioinformatics data analysis at **CFSAN, FDA.**
kkonganti@11 7
kkonganti@11 8 ---
kkonganti@11 9
kkonganti@11 10 ### **LICENSES**
kkonganti@11 11
kkonganti@11 12 \
kkonganti@11 13  
kkonganti@11 14
kkonganti@11 15 **CPIPES** is licensed under:
kkonganti@11 16
kkonganti@11 17 ```text
kkonganti@11 18 MIT License
kkonganti@11 19
kkonganti@11 20 In the U.S.A. Public Domain; elsewhere Copyright (C) 2022 Center for Food Safety and Nutrition (CFSAN)
kkonganti@11 21
kkonganti@11 22 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@11 23 of this software and associated documentation files (the "Software"), to deal
kkonganti@11 24 in the Software without restriction, including without limitation the rights
kkonganti@11 25 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@11 26 copies of the Software, and to permit persons to whom the Software is
kkonganti@11 27 furnished to do so, subject to the following conditions:
kkonganti@11 28
kkonganti@11 29 The above copyright notice and this permission notice shall be included in all
kkonganti@11 30 copies or substantial portions of the Software.
kkonganti@11 31
kkonganti@11 32 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@11 33 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@11 34 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@11 35 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@11 36 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@11 37 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@11 38 SOFTWARE.
kkonganti@11 39 ```
kkonganti@11 40
kkonganti@11 41 \
kkonganti@11 42  
kkonganti@11 43
kkonganti@11 44 Major portions of **CPIPES** are built on modified versions of many modules, scripts and libraries from [nf-core/modules](https://github.com/nf-core/modules) and [nf-core/rnaseq](https://github.com/nf-core/rnaseq) which are originally licensed under:
kkonganti@11 45
kkonganti@11 46 ```text
kkonganti@11 47 MIT License
kkonganti@11 48
kkonganti@11 49 Copyright (c) Philip Ewels
kkonganti@11 50 Copyright (c) Phil Ewels, Rickard Hammarén
kkonganti@11 51
kkonganti@11 52 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@11 53 of this software and associated documentation files (the "Software"), to deal
kkonganti@11 54 in the Software without restriction, including without limitation the rights
kkonganti@11 55 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@11 56 copies of the Software, and to permit persons to whom the Software is
kkonganti@11 57 furnished to do so, subject to the following conditions:
kkonganti@11 58
kkonganti@11 59 The above copyright notice and this permission notice shall be included in all
kkonganti@11 60 copies or substantial portions of the Software.
kkonganti@11 61
kkonganti@11 62 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@11 63 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@11 64 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@11 65 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@11 66 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@11 67 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@11 68 SOFTWARE.
kkonganti@11 69 ```
kkonganti@11 70
kkonganti@11 71 \
kkonganti@11 72  
kkonganti@11 73
kkonganti@11 74 The **MultiQC** report, in addition uses [DataTables](https://datatables.net), which is licensed under:
kkonganti@11 75
kkonganti@11 76 ```text
kkonganti@11 77 MIT License
kkonganti@11 78
kkonganti@11 79 Copyright (C) 2008-2022, SpryMedia Ltd.
kkonganti@11 80
kkonganti@11 81 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@11 82 of this software and associated documentation files (the "Software"), to deal
kkonganti@11 83 in the Software without restriction, including without limitation the rights
kkonganti@11 84 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@11 85 copies of the Software, and to permit persons to whom the Software is
kkonganti@11 86 furnished to do so, subject to the following conditions:
kkonganti@11 87
kkonganti@11 88 The above copyright notice and this permission notice shall be included in all
kkonganti@11 89 copies or substantial portions of the Software.
kkonganti@11 90
kkonganti@11 91 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@11 92 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@11 93 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@11 94 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@11 95 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@11 96 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@11 97 SOFTWARE.
kkonganti@11 98 ```
kkonganti@11 99
kkonganti@11 100 \
kkonganti@11 101  
kkonganti@11 102
kkonganti@11 103 The **NCBI datasets** is licensed under Public Domain.
kkonganti@11 104
kkonganti@11 105 ```text
kkonganti@11 106 # Public Domain notice
kkonganti@11 107
kkonganti@11 108 National Center for Biotechnology Information
kkonganti@11 109
kkonganti@11 110 This software is a "United States Government Work" under the terms of the
kkonganti@11 111 United States Copyright Act. It was written as part of the authors'
kkonganti@11 112 official duties as United States Government employees and thus cannot
kkonganti@11 113 be copyrighted. This software is freely available to the public for
kkonganti@11 114 use. The National Library of Medicine and the U.S. Government have not
kkonganti@11 115 placed any restriction on its use or reproduction.
kkonganti@11 116
kkonganti@11 117 Although all reasonable efforts have been taken to ensure the accuracy
kkonganti@11 118 and reliability of the software and data, the NLM and the U.S.
kkonganti@11 119 Government do not and cannot warrant the performance or results that
kkonganti@11 120 may be obtained by using this software or data. The NLM and the U.S.
kkonganti@11 121 Government disclaim all warranties, express or implied, including
kkonganti@11 122 warranties of performance, merchantability or fitness for any
kkonganti@11 123 particular purpose.
kkonganti@11 124
kkonganti@11 125 Please cite NCBI in any work or product based on this material.
kkonganti@11 126 ```