Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.7.0/modules/custom/dump_software_versions/main.nf @ 17:0e7a0053e4a6

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 10:42:02 -0400
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16:b90e5a7a3d4f 17:0e7a0053e4a6
1 process DUMP_SOFTWARE_VERSIONS {
2 tag "${params.pipeline} software versions"
3 label 'process_pico'
4
5 // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
6 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
7 conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null)
8 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
9 'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' :
10 'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }"
11
12 input:
13 path versions
14
15 output:
16 path "software_versions.yml" , emit: yml
17 path "software_versions_mqc.yml", emit: mqc_yml
18 path "versions.yml" , emit: versions
19
20 when:
21 task.ext.when == null || task.ext.when
22
23 script:
24 def args = task.ext.args ?: ''
25 template 'dumpsoftwareversions.py'
26 }