Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.7.0/workflows/conf/bettercallsal.config @ 18:75558ffe3e68

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 11:01:13 -0400
parents 0e7a0053e4a6
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17:0e7a0053e4a6 18:75558ffe3e68
1 params { 1 params {
2 workflow_conceived_by = 'Kranti Konganti' 2 workflow_conceived_by = 'Kranti Konganti'
3 workflow_built_by = 'Kranti Konganti' 3 workflow_built_by = 'Kranti Konganti'
4 workflow_version = '0.7.0' 4 workflow_version = '0.7.0'
5 bcs_root_dbdir = '/hpc/db/bettercallsal/latest' 5 bcs_root_dbdir = '/galaxy/cfsan-centriflaken-db/bettercallsal/PDG000000002.3082'
6 bcs_db_mode = 'snp' 6 bcs_db_mode = 'snp'
7 bcs_db_mode_index = (params.bcs_db_mode ==~ /snp/ ? '_cluster' : '_serotype') 7 bcs_db_mode_index = (params.bcs_db_mode ==~ /snp/ ? '_cluster' : '_serotype')
8 bcs_thresholds = 'strict' 8 bcs_thresholds = 'strict'
9 bcs_concat_pe = true 9 bcs_concat_pe = true
10 bbmerge_run = (params.bcs_concat_pe ? false : true) 10 bbmerge_run = (params.bcs_concat_pe ? false : true)