Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison cfsan_bettercallsal.xml @ 6:83ed52d5af32

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"planemo upload"
author kkonganti
date Tue, 06 Jun 2023 10:05:24 -0400
parents 0fb33799f347
children 7d2019190ba2
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5:0fb33799f347 6:83ed52d5af32
71 <when value="paired"> 71 <when value="paired">
72 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" /> 72 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" />
73 <param name="fq_suffix" value="_R1_001.fastq.gz" type="text" label="Suffix of the R1 FASTQ" 73 <param name="fq_suffix" value="_R1_001.fastq.gz" type="text" label="Suffix of the R1 FASTQ"
74 help="For any data sets downloaded from NCBI into Galaxy, change this to _forward.fastq.gz suffix."/> 74 help="For any data sets downloaded from NCBI into Galaxy, change this to _forward.fastq.gz suffix."/>
75 <param name="fq2_suffix" value="_R2_001.fastq.gz" type="text" label="Suffix of the R2 FASTQ" 75 <param name="fq2_suffix" value="_R2_001.fastq.gz" type="text" label="Suffix of the R2 FASTQ"
76 help="For any data sets downloaded from NCBI into Galaxy, change this to _reverse.fastq.gz suffix./> 76 help="For any data sets downloaded from NCBI into Galaxy, change this to _reverse.fastq.gz suffix."/>
77 </when> 77 </when>
78 </conditional> 78 </conditional>
79 <param name="tuspy_n" optional="true" value="10" type="integer" label="Enter the number of top unique serotypes to retain after initial MASH screen step" 79 <param name="tuspy_n" optional="true" value="10" type="integer" label="Enter the number of top unique serotypes to retain after initial MASH screen step"
80 help="The default value of 10 is suitable for almost all scenarios."/> 80 help="The default value of 10 is suitable for almost all scenarios."/>
81 <param name="bcs_thresholds" type="select" label="Enter the type of base quality thresholds to be set with bettercallsal" 81 <param name="bcs_thresholds" type="select" label="Enter the type of base quality thresholds to be set with bettercallsal"