Mercurial > repos > kkonganti > cfsan_bettercallsal
comparison cfsan_bettercallsal.xml @ 6:83ed52d5af32
"planemo upload"
author | kkonganti |
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date | Tue, 06 Jun 2023 10:05:24 -0400 |
parents | 0fb33799f347 |
children | 7d2019190ba2 |
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5:0fb33799f347 | 6:83ed52d5af32 |
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71 <when value="paired"> | 71 <when value="paired"> |
72 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" /> | 72 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" /> |
73 <param name="fq_suffix" value="_R1_001.fastq.gz" type="text" label="Suffix of the R1 FASTQ" | 73 <param name="fq_suffix" value="_R1_001.fastq.gz" type="text" label="Suffix of the R1 FASTQ" |
74 help="For any data sets downloaded from NCBI into Galaxy, change this to _forward.fastq.gz suffix."/> | 74 help="For any data sets downloaded from NCBI into Galaxy, change this to _forward.fastq.gz suffix."/> |
75 <param name="fq2_suffix" value="_R2_001.fastq.gz" type="text" label="Suffix of the R2 FASTQ" | 75 <param name="fq2_suffix" value="_R2_001.fastq.gz" type="text" label="Suffix of the R2 FASTQ" |
76 help="For any data sets downloaded from NCBI into Galaxy, change this to _reverse.fastq.gz suffix./> | 76 help="For any data sets downloaded from NCBI into Galaxy, change this to _reverse.fastq.gz suffix."/> |
77 </when> | 77 </when> |
78 </conditional> | 78 </conditional> |
79 <param name="tuspy_n" optional="true" value="10" type="integer" label="Enter the number of top unique serotypes to retain after initial MASH screen step" | 79 <param name="tuspy_n" optional="true" value="10" type="integer" label="Enter the number of top unique serotypes to retain after initial MASH screen step" |
80 help="The default value of 10 is suitable for almost all scenarios."/> | 80 help="The default value of 10 is suitable for almost all scenarios."/> |
81 <param name="bcs_thresholds" type="select" label="Enter the type of base quality thresholds to be set with bettercallsal" | 81 <param name="bcs_thresholds" type="select" label="Enter the type of base quality thresholds to be set with bettercallsal" |