Mercurial > repos > kkonganti > cfsan_bettercallsal
comparison 0.5.0/modules/salmon/index/main.nf @ 9:a492d1511fb6
"planemo upload"
author | kkonganti |
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date | Tue, 06 Jun 2023 11:26:39 -0400 |
parents | 365849f031fd |
children |
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8:22165d5e5e0a | 9:a492d1511fb6 |
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1 process SALMON_INDEX { | 1 process SALMON_INDEX { |
2 tag "$meta.id" | 2 tag "$meta.id" |
3 label "process_low" | 3 label "process_low" |
4 | 4 |
5 module (params.enable_module ? "${params.swmodulepath}${params.fs}salmon${params.fs}1.9.0" : null) | 5 module (params.enable_module ? "${params.swmodulepath}${params.fs}salmon${params.fs}1.9.0" : null) |
6 conda (params.enable_conda ? 'conda-forge::libgcc-ng bioconda::salmon=1.9.0' : null) | 6 conda (params.enable_conda ? 'conda-forge::libgcc-ng bioconda::salmon=1.10.1' : null) |
7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | 7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? |
8 'https://depot.galaxyproject.org/singularity/salmon:1.9.0--h7e5ed60_1' : | 8 'https://depot.galaxyproject.org/singularity/salmon:1.9.0--h7e5ed60_1' : |
9 'quay.io/biocontainers/salmon:1.9.0--h7e5ed60_1' }" | 9 'quay.io/biocontainers/salmon:1.9.0--h7e5ed60_1' }" |
10 | 10 |
11 input: | 11 input: |