Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.5.0/modules/salmon/quant/main.nf @ 9:a492d1511fb6

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload"
author kkonganti
date Tue, 06 Jun 2023 11:26:39 -0400
parents 365849f031fd
children
comparison
equal deleted inserted replaced
8:22165d5e5e0a 9:a492d1511fb6
1 process SALMON_QUANT { 1 process SALMON_QUANT {
2 tag "$meta.id" 2 tag "$meta.id"
3 label "process_medium" 3 label "process_medium"
4 4
5 module (params.enable_module ? "${params.swmodulepath}${params.fs}salmon${params.fs}1.9.0" : null) 5 module (params.enable_module ? "${params.swmodulepath}${params.fs}salmon${params.fs}1.9.0" : null)
6 conda (params.enable_conda ? 'conda-forge::libgcc-ng bioconda::salmon=1.9.0' : null) 6 conda (params.enable_conda ? 'conda-forge::libgcc-ng bioconda::salmon=1.10.1' : null)
7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
8 'https://depot.galaxyproject.org/singularity/salmon:1.9.0--h7e5ed60_1' : 8 'https://depot.galaxyproject.org/singularity/salmon:1.9.0--h7e5ed60_1' :
9 'quay.io/biocontainers/salmon:1.9.0--h7e5ed60_1' }" 9 'quay.io/biocontainers/salmon:1.9.0--h7e5ed60_1' }"
10 input: 10 input:
11 tuple val(meta), path(reads_or_bam), path(index_or_tr_fasta) 11 tuple val(meta), path(reads_or_bam), path(index_or_tr_fasta)