Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.6.1/workflows/conf/bettercallsal.config @ 12:c5faadb3386f

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"planemo upload"
author kkonganti
date Tue, 05 Sep 2023 11:57:15 -0400
parents 749faef1caa9
children
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11:749faef1caa9 12:c5faadb3386f
1 params { 1 params {
2 workflow_conceived_by = 'Kranti Konganti' 2 workflow_conceived_by = 'Kranti Konganti'
3 workflow_built_by = 'Kranti Konganti' 3 workflow_built_by = 'Kranti Konganti'
4 workflow_version = '0.6.1' 4 workflow_version = '0.6.1'
5 bcs_root_dbdir = '/hpc/db/bettercallsal/latest' 5 bcs_root_dbdir = '/tool/tool-data/cfsan_bettercallsal_db/latest'
6 bcs_db_mode = 'snp' 6 bcs_db_mode = 'snp'
7 bcs_db_mode_index = (params.bcs_db_mode ==~ /snp/ ? '_cluster' : '_serotype') 7 bcs_db_mode_index = (params.bcs_db_mode ==~ /snp/ ? '_cluster' : '_serotype')
8 bcs_thresholds = 'strict' 8 bcs_thresholds = 'strict'
9 bcs_concat_pe = true 9 bcs_concat_pe = true
10 bbmerge_run = (params.bcs_concat_pe ? false : true) 10 bbmerge_run = (params.bcs_concat_pe ? false : true)