Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison cfsan_bettercallsal.xml @ 3:e06ae620fcb2

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"planemo upload"
author kkonganti
date Tue, 06 Jun 2023 09:49:28 -0400
parents 4678c2cd1c9e
children fa1d249ca172
comparison
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2:4678c2cd1c9e 3:e06ae620fcb2
44 --fq_single_end true 44 --fq_single_end true
45 #elif (str($input_read_type_cond.input_read_type) == "paired"): 45 #elif (str($input_read_type_cond.input_read_type) == "paired"):
46 --fq_single_end false --fq2_suffix '${input_read_type_cond.fq2_suffix}' 46 --fq_single_end false --fq2_suffix '${input_read_type_cond.fq2_suffix}'
47 #end if 47 #end if
48 --tuspy_n $tuspy_n 48 --tuspy_n $tuspy_n
49 if ($sourmash_cond.run == "true"): 49 #if ($sourmash_cond.run == "true"):
50 --sfhpy_fcv $sourmash_run.sfhpy_fcv 50 --sfhpy_fcv $sourmash_run.sfhpy_fcv
51 #end if 51 #end if
52 --bcs_thresholds $bcs_thresholds 52 --bcs_thresholds $bcs_thresholds
53 --fq_filename_delim '${fq_filename_delim}' 53 --fq_filename_delim '${fq_filename_delim}'
54 --fq_filename_delim_idx $fq_filename_delim_idx 54 --fq_filename_delim_idx $fq_filename_delim_idx