--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.5.0/modules/gen_samplesheet/main.nf	Mon Jun 05 18:48:51 2023 -0400
@@ -0,0 +1,41 @@
+process GEN_SAMPLESHEET {
+    tag "${inputdir.simpleName}"
+    label "process_pico"
+
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
+    conda (params.enable_conda ? "conda-forge::python=3.9.5" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/python:3.9--1' :
+        'quay.io/biocontainers/python:3.9--1' }"
+
+    input:
+        val inputdir
+
+    output:
+        path '*.csv'       , emit: csv
+        path 'versions.yml', emit: versions
+
+    when:
+        task.ext.when == null || task.ext.when
+
+    // This script (fastq_dir_to_samplesheet.py) is distributed
+    // as part of the pipeline nf-core/rnaseq/bin/. MIT License.
+    script:
+        def this_script_args = (params.fq_single_end ? ' -se' : '')
+        this_script_args += (params.fq_suffix ? " -r1 '${params.fq_suffix}'" : '')
+        this_script_args += (params.fq2_suffix ? " -r2 '${params.fq2_suffix}'" : '')
+
+        """
+        fastq_dir_to_samplesheet.py -sn \\
+            -st '${params.fq_strandedness}' \\
+            -sd '${params.fq_filename_delim}' \\
+            -si ${params.fq_filename_delim_idx} \\
+            ${this_script_args} \\
+            ${inputdir} autogen_samplesheet.csv
+
+        cat <<-END_VERSIONS > versions.yml
+        "${task.process}":
+            python: \$( python --version | sed 's/Python //g' )
+        END_VERSIONS
+        """
+}
\ No newline at end of file