--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.5.0/modules/index_metadata/main.nf	Mon Jun 05 18:48:51 2023 -0400
@@ -0,0 +1,37 @@
+process INDEX_METADATA {
+    tag "get_top_unique_mash_hit_genomes.py"
+    label "process_pico"
+
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
+    conda (params.enable_conda ? "conda-forge::python=3.10.4" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/python:3.10.4' :
+        'quay.io/biocontainers/python:3.10.4' }"
+
+    input:
+        tuple val(type), path(sero_tbl)
+
+    output:
+        path '*.ACC2SERO.pickle', emit: acc2sero
+        path 'versions.yml'     , emit: versions
+
+    when:
+        task.ext.when == null || task.ext.when
+
+    script:
+        def args = task.ext.args ?: ''
+        def prefix = (
+            type.find(/_comp/) \
+            ? type.replaceAll(/\_comp/, 'per_comp_serotype') \
+            : type.replaceAll(/\_snp/, 'per_snp_cluster')
+        )
+        """
+        get_top_unique_mash_hit_genomes.py \\
+            -s $sero_tbl -op $prefix
+
+        cat <<-END_VERSIONS > versions.yml
+        "${task.process}":
+            python: \$( python --version | sed 's/Python //g' )
+        END_VERSIONS
+        """
+}
\ No newline at end of file