--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.5.0/modules/mash/sketch/main.nf	Mon Jun 05 18:48:51 2023 -0400
@@ -0,0 +1,41 @@
+process MASH_SKETCH {
+    tag "mash sketch"
+    label 'process_micro'
+
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}mash${params.fs}2.3" : null)
+    conda (params.enable_conda ? "conda-forge::capnproto bioconda::mash=2.3" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/mash:2.3--he348c14_1':
+        'quay.io/biocontainers/mash:2.3--he348c14_1' }"
+
+    input:
+        tuple val(meta), path(query), path(genomes_dir)
+
+    output:
+        tuple val(meta), path("*.msh")               , emit: sketch
+        tuple val(meta), path("*_mash_sketch.status"), emit: stats
+        path "versions.yml"                          , emit: versions
+
+    when:
+        task.ext.when == null || task.ext.when
+
+    script:
+        def args = task.ext.args ?: ''
+        def prefix = task.ext.prefix ?: "${meta.id}"
+        def queries = (query ?: query.collect().join(' '))
+        sleep(Math.round(params.genomes_chunk.toInteger()) as int * 600)
+        """
+        mash \\
+            sketch \\
+            -p $task.cpus \\
+            -o "msh.k${params.mashsketch_k}.${params.mashsketch_s}h.${prefix}" \\
+            $args \\
+            $queries \\
+            2> ${prefix}_mash_sketch.status
+
+        cat <<-END_VERSIONS > versions.yml
+        "${task.process}":
+            mash: \$( mash --version )
+        END_VERSIONS
+        """
+}
\ No newline at end of file