--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.6.1/modules/multiqc/README.md	Tue Sep 05 11:51:40 2023 -0400
@@ -0,0 +1,67 @@
+# NextFlow DSL2 Module
+
+```bash
+MULTIQC
+```
+
+## Description
+
+Generate an aggregated [**MultiQC**](https://multiqc.info/) report. This particular module **will only work** within the framework of `cpipes` as in, it uses many `cpipes` related UNIX absolute paths to store and retrieve **MultiQC** related configration files and `cpipes` context aware metadata. It also uses a custom logo with filename `FDa-Logo-Blue---medium-01.png` which should be located inside an `assets` folder from where the NextFlow script including this module will be executed.
+
+\
+ 
+
+### `input:`
+
+___
+
+Type: `path`
+
+Takes in NextFlow input type of `path` which points to many log files that **MultiQC** should parse.
+
+Ex:
+
+```groovy
+[ '/data/sample1/centrifuge/cent_output.txt', '/data/sample1/kraken/kraken_output.txt'] ]
+```
+
+\
+ 
+
+### `output:`
+
+___
+
+#### `report`
+
+Type: `path`
+
+Outputs a NextFlow output type of `path` pointing to the location of **MultiQC** final HTML report.
+
+\
+ 
+
+#### `data`
+
+Type: `path`
+
+NextFlow output type of `path` pointing to the data files folder generated by **MultiQC** which were used to generate plots and HTML report.
+
+\
+ 
+
+#### `plots`
+
+Type: `path`
+Optional: `true`
+
+NextFlow output type of `path` pointing to the plots folder generated by **MultiQC**.
+
+\
+ 
+
+#### `versions`
+
+Type: `path`
+
+NextFlow output type of `path` pointing to the `.yml` file storing software versions for this process.