Mercurial > repos > kkonganti > cfsan_bettercallsal
view 0.5.0/modules/custom/dump_software_versions/README.md @ 1:365849f031fd
"planemo upload"
author | kkonganti |
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date | Mon, 05 Jun 2023 18:48:51 -0400 |
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# NextFlow DSL2 Module ```bash DUMP_SOFTWARE_VERSIONS ``` ## Description Given an `YAML` format file, produce a final `.yml` file which has unique entries and a corresponding `.mqc.yml` file for use with `multiqc`. \ ### `input:` ___ Type: `path` Takes in a `path` (`versions`) type pointing to the file to be used to produce a final `.yml` file without any duplicate entries and a `.mqc.yml` file. Generally, this is passed by mixing `versions` from various run time channels and finally passed to this module to produce a final software versions list. Ex: ```groovy [ '/hpc/scratch/test/work/9b/e7bf7e28806419c1c9a571dacd1f67/versions.yml' ] ``` \ ### `output:` ___ #### `yml` Type: `path` NextFlow output type of `path` type pointing to an `YAML` file with software versions. \ #### `mqc_yml` Type: `path` NextFlow output type of `path` pointing to `.mqc.yml` file which can be used to produce a software versions' table with `multiqc`. \ #### `versions` Type: `path` NextFlow output type of `path` pointing to the `.yml` file storing software versions for this process.