Mercurial > repos > kkonganti > cfsan_bettercallsal
view 0.5.0/modules/download_pdg_metadata/main.nf @ 1:365849f031fd
"planemo upload"
author | kkonganti |
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date | Mon, 05 Jun 2023 18:48:51 -0400 |
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process DOWNLOAD_PDG_METADATA { tag "dl_pdg_metadata.py" label "process_pico" module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) conda (params.enable_conda ? "conda-forge::python=3.10.4" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/python:3.10.4' : 'quay.io/biocontainers/python:3.10.4' }" input: val pdg_release output: path "**${params.fs}*.metadata.tsv" , emit: pdg_metadata path "**${params.fs}*.reference_target.cluster_list.tsv", emit: snp_cluster_metadata path "**${params.fs}*accs_all.txt" , emit: accs path 'versions.yml' , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' args += (pdg_release ? " -rel ${pdg_release}" : '') """ dl_pdg_metadata.py \\ $args cat <<-END_VERSIONS > versions.yml "${task.process}": python: \$( python --version | sed 's/Python //g' ) END_VERSIONS """ }