Mercurial > repos > kkonganti > cfsan_bettercallsal
view 0.6.1/conf/computeinfra.config @ 11:749faef1caa9
"planemo upload"
author | kkonganti |
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date | Tue, 05 Sep 2023 11:51:40 -0400 |
parents | |
children | 74baf1a6c3bd |
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standard { process.executor = 'local' process.cpus = 1 params.enable_conda = false params.enable_module = true singularity.enabled = false docker.enabled = false } stdkondagac { process.executor = 'local' process.cpus = 4 params.enable_conda = true conda.enabled = true conda.useMicromamba = true params.enable_module = false singularity.enabled = false docker.enabled = false } stdcingularitygac { process.executor = 'local' process.cpus = 4 params.enable_conda = false params.enable_module = false singularity.enabled = true singularity.autoMounts = true singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}" docker.enabled = false } raven { process.executor = 'slurm' process.queue = 'prod' process.memory = '10GB' process.cpus = 4 params.enable_conda = false params.enable_module = true singularity.enabled = false docker.enabled = false clusterOptions = '--signal B:USR2' } eprod { process.executor = 'slurm' process.queue = 'lowmem,midmem,bigmem' process.memory = '10GB' process.cpus = 4 params.enable_conda = false params.enable_module = true singularity.enabled = false docker.enabled = false clusterOptions = '--signal B:USR2' } eprodkonda { process.executor = 'slurm' process.queue = 'lowmem,midmem,bigmem' process.memory = '10GB' process.cpus = 4 params.enable_conda = true conda.enabled = true conda.useMicromamba = true params.enable_module = false singularity.enabled = false singularity.autoMounts = true singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}" docker.enabled = false clusterOptions = '--signal B:USR2' } eprodcingularity { process.executor = 'slurm' process.queue = 'lowmem,midmem,bigmem' process.memory = '10GB' process.cpus = 4 params.enable_conda = false params.enable_module = false singularity.enabled = true singularity.autoMounts = true singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}" docker.enabled = false clusterOptions = '--signal B:USR2' } cingularity { process.executor = 'slurm' process.queue = 'prod' process.memory = '10GB' process.cpus = 4 singularity.enabled = true singularity.autoMounts = true singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}" docker.enabled = false params.enable_conda = false params.enable_module = false clusterOptions = '--signal B:USR2' } cingularitygac { process.executor = 'slurm' executor.$slurm.exitReadTimeout = 120000 process.queue = 'centriflaken' process.cpus = 4 singularity.enabled = true singularity.autoMounts = true singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}" docker.enabled = false params.enable_conda = false params.enable_module = false clusterOptions = '-n 1 --signal B:USR2' } konda { process.executor = 'slurm' process.queue = 'prod' process.memory = '10GB' process.cpus = 4 singularity.enabled = false docker.enabled = false params.enable_conda = true conda.enabled = true conda.useMicromamba = true params.enable_module = false clusterOptions = '--signal B:USR2' } kondagac { process.executor = 'slurm' executor.$slurm.exitReadTimeout = 120000 process.queue = 'centriflaken' process.cpus = 4 singularity.enabled = false docker.enabled = false params.enable_conda = true conda.enabled = true conda.useMicromamba = true params.enable_module = false clusterOptions = '-n 1 --signal B:USR2' } cfsanawsbatch { process.executor = 'awsbatch' process.queue = 'cfsan-nf-batch-job-queue' aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws' aws.batch.region = 'us-east-1' aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw'] singularity.enabled = false singularity.autoMounts = true docker.enabled = true params.enable_conda = false conda.enabled = false conda.useMicromamba = false params.enable_module = false }