Mercurial > repos > kkonganti > cfsan_bettercallsal
view 0.7.0/modules/samplesheet_check/main.nf @ 18:75558ffe3e68
planemo upload
author | kkonganti |
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date | Mon, 15 Jul 2024 11:01:13 -0400 |
parents | 0e7a0053e4a6 |
children |
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process SAMPLESHEET_CHECK { tag "$samplesheet" label "process_femto" module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) conda (params.enable_conda ? "conda-forge::python=3.9.5" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/python:3.9--1' : 'quay.io/biocontainers/python:3.9--1' }" input: path samplesheet output: path '*.csv' , emit: csv path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when script: // This script is bundled with the pipeline, in nf-core/rnaseq/bin/ """ check_samplesheet.py \\ $samplesheet \\ samplesheet.valid.csv cat <<-END_VERSIONS > versions.yml "${task.process}": python: \$( python --version | sed 's/Python //g' ) END_VERSIONS """ }