kkonganti@17: process DUMP_SOFTWARE_VERSIONS {
kkonganti@17:     tag "${params.pipeline} software versions"
kkonganti@17:     label 'process_pico'
kkonganti@17: 
kkonganti@17:     // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
kkonganti@17:     module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
kkonganti@17:     conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null)
kkonganti@17:     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
kkonganti@17:         'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' :
kkonganti@17:         'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }"
kkonganti@17: 
kkonganti@17:     input:
kkonganti@17:     path versions
kkonganti@17: 
kkonganti@17:     output:
kkonganti@17:     path "software_versions.yml"    , emit: yml
kkonganti@17:     path "software_versions_mqc.yml", emit: mqc_yml
kkonganti@17:     path "versions.yml"             , emit: versions
kkonganti@17: 
kkonganti@17:     when:
kkonganti@17:     task.ext.when == null || task.ext.when
kkonganti@17: 
kkonganti@17:     script:
kkonganti@17:     def args = task.ext.args ?: ''
kkonganti@17:     template 'dumpsoftwareversions.py'
kkonganti@17: }