kkonganti@17: params { kkonganti@17: workflow_conceived_by = 'Kranti Konganti' kkonganti@17: workflow_built_by = 'Kranti Konganti' kkonganti@17: workflow_version = '0.7.0' kkonganti@17: pdg_release = 'PDG000000002.2876' kkonganti@17: ncbi_asm_suffix = '_genomic.fna.gz' kkonganti@17: wcomp_serocol = false kkonganti@17: wcomp_seronamecol = false kkonganti@17: wcomp_acc_col = false kkonganti@17: wcomp_target_acc_col = false kkonganti@17: wcomp_complete_sero = false kkonganti@17: wcomp_not_null_serovar = false kkonganti@17: wcomp_num = false kkonganti@17: wcomp_min_contig_size = false kkonganti@17: wcomp_i = false kkonganti@17: wsnp_serocol = false kkonganti@17: wsnp_seronamecol = false kkonganti@17: wsnp_acc_col = false kkonganti@17: wsnp_target_acc_col = false kkonganti@17: wsnp_complete_sero = true kkonganti@17: wsnp_not_null_serovar = false kkonganti@17: wsnp_num = false kkonganti@17: wsnp_i = "'I 4,[5],12:i:-'" kkonganti@17: genomes_chunk = 100 kkonganti@17: mashsketch_run = true kkonganti@17: mashsketch_l = true kkonganti@17: mashsketch_I = false kkonganti@17: mashsketch_C = false kkonganti@17: mashsketch_k = 21 kkonganti@17: mashsketch_s = 1000 kkonganti@17: mashsketch_i = false kkonganti@17: mashsketch_S = false kkonganti@17: mashsketch_w = false kkonganti@17: mashsketch_r = false kkonganti@17: mashsketch_b = false kkonganti@17: mashsketch_m = false kkonganti@17: mashsketch_c = false kkonganti@17: mashsketch_g = false kkonganti@17: mashsketch_n = false kkonganti@17: mashsketch_a = false kkonganti@17: mashsketch_z = false kkonganti@17: mashsketch_Z = false kkonganti@17: }