kkonganti@17: plugins {
kkonganti@17:     id 'nf-amazon'
kkonganti@17: }
kkonganti@17: 
kkonganti@17: params {
kkonganti@17:     fs = File.separator
kkonganti@17:     cfsanpipename = 'CPIPES'
kkonganti@17:     center = 'CFSAN, FDA.'
kkonganti@17:     libs = "${projectDir}${params.fs}lib"
kkonganti@17:     modules = "${projectDir}${params.fs}modules"
kkonganti@17:     projectconf = "${projectDir}${params.fs}conf"
kkonganti@17:     assetsdir = "${projectDir}${params.fs}assets"
kkonganti@17:     subworkflows = "${projectDir}${params.fs}subworkflows"
kkonganti@17:     workflows = "${projectDir}${params.fs}workflows"
kkonganti@17:     workflowsconf = "${workflows}${params.fs}conf"
kkonganti@17:     routines = "${libs}${params.fs}routines"
kkonganti@17:     toolshelp = "${libs}${params.fs}help"
kkonganti@17:     swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules"
kkonganti@17:     tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports"
kkonganti@17:     dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt"
kkonganti@17:     dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt"
kkonganti@17:     max_cpus = 10
kkonganti@17:     linewidth = 80
kkonganti@17:     pad = 32
kkonganti@17:     pipeline = null
kkonganti@17:     help = null
kkonganti@17:     input = null
kkonganti@17:     output = null
kkonganti@17:     metadata = null
kkonganti@17:     publish_dir_mode = "copy"
kkonganti@17:     publish_dir_overwrite = true
kkonganti@17:     user_email = null
kkonganti@17: }
kkonganti@17: 
kkonganti@17: dag {
kkonganti@17:     enabled = true
kkonganti@17:     file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html"
kkonganti@17:     overwrite = true
kkonganti@17: }
kkonganti@17: 
kkonganti@17: report {
kkonganti@17:     enabled = true
kkonganti@17:     file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html"
kkonganti@17:     overwrite = true
kkonganti@17: }
kkonganti@17: 
kkonganti@17: trace {
kkonganti@17:     enabled = true
kkonganti@17:     file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt"
kkonganti@17:     overwrite = true
kkonganti@17: }
kkonganti@17: 
kkonganti@17: timeline {
kkonganti@17:     enabled = true
kkonganti@17:     file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html"
kkonganti@17:     overwrite = true
kkonganti@17: }
kkonganti@17: