kkonganti@11: params { kkonganti@11: workflow_conceived_by = 'Kranti Konganti' kkonganti@11: workflow_built_by = 'Kranti Konganti' kkonganti@11: workflow_version = '0.6.1' kkonganti@11: pdg_release = 'PDG000000002.2658' kkonganti@11: ncbi_asm_suffix = '_genomic.fna.gz' kkonganti@11: wcomp_serocol = false kkonganti@11: wcomp_complete_sero = false kkonganti@11: wcomp_not_null_serovar = false kkonganti@11: wcomp_num = false kkonganti@11: wcomp_min_contig_size = false kkonganti@11: wcomp_i = false kkonganti@11: wsnp_serocol = false kkonganti@11: wsnp_complete_sero = true kkonganti@11: wsnp_not_null_serovar = false kkonganti@11: wsnp_num = false kkonganti@11: wsnp_i = "'I 4,[5],12:i:-'" kkonganti@11: genomes_chunk = 100 kkonganti@11: mashsketch_run = true kkonganti@11: mashsketch_l = true kkonganti@11: mashsketch_I = false kkonganti@11: mashsketch_C = false kkonganti@11: mashsketch_k = 21 kkonganti@11: mashsketch_s = 1000 kkonganti@11: mashsketch_i = false kkonganti@11: mashsketch_S = false kkonganti@11: mashsketch_w = false kkonganti@11: mashsketch_r = false kkonganti@11: mashsketch_b = false kkonganti@11: mashsketch_m = false kkonganti@11: mashsketch_c = false kkonganti@11: mashsketch_g = false kkonganti@11: mashsketch_n = false kkonganti@11: mashsketch_a = false kkonganti@11: mashsketch_z = false kkonganti@11: mashsketch_Z = false kkonganti@11: }