# HG changeset patch
# User kkonganti
# Date 1694114530 14400
# Node ID b90e5a7a3d4f7bb7f24f8c093affaa5d2866fc4d
# Parent  1972677994a662cafcbdc468fa5e7784a52eb9cf
"planemo upload"

diff -r 1972677994a6 -r b90e5a7a3d4f cfsan_bettercallsal.xml
--- a/cfsan_bettercallsal.xml	Thu Sep 07 10:27:12 2023 -0400
+++ b/cfsan_bettercallsal.xml	Thu Sep 07 15:22:10 2023 -0400
@@ -154,10 +154,7 @@
 **Testing and Validation**
 
 The CPIPES - bettercallsal Nextflow pipeline has been wrapped to make it work in Galaxy. It takes in either paired or unpaired short reads list as an input 
-and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has been shown to call multiple
-Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in 
-our preprint (https://www.biorxiv.org/content/10.1101/2023.04.06.535929v1.full). All the original testing and validation was 
-done on the command line on the CFSAN Raven2 HPC Cluster.
+and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has been shown to call multiple Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in our publication (https://www.frontiersin.org/articles/10.3389/fmicb.2023.1200983/full). All the original testing and validation was done on the command line on the CFSAN Raven2 HPC Cluster.
 
 
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