Mercurial > repos > kkonganti > cfsan_bettercallsal
changeset 10:1b9de878b04a
"planemo upload"
| author | kkonganti |
|---|---|
| date | Thu, 15 Jun 2023 11:16:45 -0400 |
| parents | a492d1511fb6 |
| children | 749faef1caa9 |
| files | cfsan_bettercallsal.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/cfsan_bettercallsal.xml Tue Jun 06 11:26:39 2023 -0400 +++ b/cfsan_bettercallsal.xml Thu Jun 15 11:16:45 2023 -0400 @@ -148,7 +148,7 @@ **Testing and Validation** The CPIPES - bettercallsal Nextflow pipeline has been wrapped to make it work in Galaxy. It takes in either paired or unpaired short reads list as an input -and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has shown to call multiple +and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has been shown to call multiple Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in our preprint (https://www.biorxiv.org/content/10.1101/2023.04.06.535929v1.full). All the original testing and validation was done on the command line on the CFSAN Raven2 HPC Cluster.