cfsan_centriflaken: 0.4.2/modules/samplesheet

planemo upload

rev	line source
kkonganti@105	1 process SAMPLESHEET_CHECK {
kkonganti@105	2 tag "$samplesheet"
kkonganti@105	3 label "process_femto"
kkonganti@105	4
kkonganti@105	5 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
kkonganti@105	6 conda (params.enable_conda ? "conda-forge::python=3.9.5" : null)
kkonganti@105	7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
kkonganti@105	8 'https://depot.galaxyproject.org/singularity/python:3.9--1' :
kkonganti@105	9 'quay.io/biocontainers/python:3.9--1' }"
kkonganti@105	10
kkonganti@105	11 input:
kkonganti@105	12 path samplesheet
kkonganti@105	13
kkonganti@105	14 output:
kkonganti@105	15 path '*.csv' , emit: csv
kkonganti@105	16 path "versions.yml", emit: versions
kkonganti@105	17
kkonganti@105	18 when:
kkonganti@105	19 task.ext.when == null \|\| task.ext.when
kkonganti@105	20
kkonganti@105	21 script: // This script is bundled with the pipeline, in nf-core/rnaseq/bin/
kkonganti@105	22 """
kkonganti@105	23 check_samplesheet.py \\
kkonganti@105	24 $samplesheet \\
kkonganti@105	25 samplesheet.valid.csv
kkonganti@105	26
kkonganti@105	27 cat <<-END_VERSIONS > versions.yml
kkonganti@105	28 "${task.process}":
kkonganti@105	29 python: \$( python --version \| sed 's/Python //g' )
kkonganti@105	30 END_VERSIONS
kkonganti@105	31 """
kkonganti@105	32 }

Mercurial > repos > kkonganti > cfsan_centriflaken