Mercurial > repos > kkonganti > cfsan_centriflaken
annotate 0.2.1/conf/base.config @ 69:905def920829
"planemo upload"
| author | kkonganti |
|---|---|
| date | Wed, 13 Jul 2022 14:10:46 -0400 |
| parents | 77494b0fa3c7 |
| children |
| rev | line source |
|---|---|
| kkonganti@0 | 1 params { |
| kkonganti@0 | 2 fs = File.separator |
| kkonganti@0 | 3 cfsanpipename = 'CPIPES' |
| kkonganti@0 | 4 center = 'CFSAN, FDA.' |
| kkonganti@0 | 5 libs = "${projectDir}${params.fs}lib" |
| kkonganti@0 | 6 modules = "${projectDir}${params.fs}modules" |
| kkonganti@0 | 7 projectconf = "${projectDir}${params.fs}conf" |
| kkonganti@0 | 8 assetsdir = "${projectDir}${params.fs}assets" |
| kkonganti@0 | 9 subworkflows = "${projectDir}${params.fs}subworkflows" |
| kkonganti@0 | 10 workflows = "${projectDir}${params.fs}workflows" |
| kkonganti@0 | 11 workflowsconf = "${workflows}${params.fs}conf" |
| kkonganti@0 | 12 routines = "${libs}${params.fs}routines" |
| kkonganti@0 | 13 toolshelp = "${libs}${params.fs}help" |
| kkonganti@0 | 14 swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules" |
| kkonganti@0 | 15 tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports" |
| kkonganti@0 | 16 dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt" |
| kkonganti@0 | 17 dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt" |
| kkonganti@0 | 18 linewidth = 80 |
| kkonganti@0 | 19 pad = 32 |
| kkonganti@0 | 20 pipeline = null |
| kkonganti@0 | 21 help = null |
| kkonganti@0 | 22 input = null |
| kkonganti@0 | 23 output = null |
| kkonganti@0 | 24 metadata = null |
| kkonganti@0 | 25 publish_dir_mode = "copy" |
| kkonganti@0 | 26 publish_dir_overwrite = true |
| kkonganti@0 | 27 user_email = null |
| kkonganti@0 | 28 } |
| kkonganti@0 | 29 |
| kkonganti@0 | 30 dag { |
| kkonganti@0 | 31 enabled = true |
| kkonganti@0 | 32 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html" |
| kkonganti@0 | 33 } |
| kkonganti@0 | 34 |
| kkonganti@0 | 35 report { |
| kkonganti@0 | 36 enabled = true |
| kkonganti@0 | 37 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html" |
| kkonganti@0 | 38 } |
| kkonganti@0 | 39 |
| kkonganti@0 | 40 trace { |
| kkonganti@0 | 41 enabled = true |
| kkonganti@0 | 42 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt" |
| kkonganti@0 | 43 } |
| kkonganti@0 | 44 |
| kkonganti@0 | 45 timeline { |
| kkonganti@0 | 46 enabled = true |
| kkonganti@0 | 47 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html" |
| kkonganti@0 | 48 } |
| kkonganti@0 | 49 |