Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 76:0e35724b49f0

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 16:28:43 -0400
parents eeddd4dfd7f5
children d3ae287f740a
comparison
equal deleted inserted replaced
75:eeddd4dfd7f5 76:0e35724b49f0
13 #if not $unpaired.ext.endswith(('.fastq', '.fastq.gz')): 13 #if not $unpaired.ext.endswith(('.fastq', '.fastq.gz')):
14 #set read_R1 = str($unpaired.name) + str($unpaired.ext) 14 #set read_R1 = str($unpaired.name) + str($unpaired.ext)
15 #else: 15 #else:
16 #set read_R1 = str($unpaired.name) 16 #set read_R1 = str($unpaired.name)
17 #end if 17 #end if
18 echo $unpaired.ext
18 ln -sf '$unpaired' './cpipes-input/$read_R1'; 19 ln -sf '$unpaired' './cpipes-input/$read_R1';
19 #end for 20 #end for
20 #elif (str($input_read_type_cond.input_read_type) == "paired"): 21 #elif (str($input_read_type_cond.input_read_type) == "paired"):
21 #for _, $pair in enumerate($input_read_type_cond.input_pair) 22 #for _, $pair in enumerate($input_read_type_cond.input_pair)
22 #set read_R1 = str($pair.forward.name) + str($pair.forward.ext) 23 #set read_R1 = str($pair.forward.name) + str($pair.forward.ext)