Mercurial > repos > kkonganti > cfsan_centriflaken

comparison 0.4.0/modules/kraken2/classify/main.nf @ 104:17890124001d

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"planemo upload"
author kkonganti
date Sun, 28 Aug 2022 00:37:10 -0400
parents ce6d9548fe89
children
comparison
equal deleted inserted replaced
103:96a34c382154 104:17890124001d
17 tuple val(meta), path('*.report.txt') , emit: kraken_report 17 tuple val(meta), path('*.report.txt') , emit: kraken_report
18 tuple val(meta), path('*.output.txt') , emit: kraken_output 18 tuple val(meta), path('*.output.txt') , emit: kraken_output
19 path "versions.yml" , emit: versions 19 path "versions.yml" , emit: versions
20 20
21 when: 21 when:
22 task.ext.when == null || task.ext.when || reads 22 (task.ext.when == null || task.ext.when) && (meta.is_assembly ? reads.size() : 1)
23 23
24 script: 24 script:
25 def args = task.ext.args ?: '' 25 def args = task.ext.args ?: ''
26 def db = meta.kraken2_db ?: '' 26 def db = meta.kraken2_db ?: ''
27 def prefix = task.ext.prefix ?: "${meta.id}" 27 def prefix = task.ext.prefix ?: "${meta.id}"