Mercurial > repos > kkonganti > cfsan_centriflaken

comparison 0.4.0/nextflow.config @ 104:17890124001d

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"planemo upload"
author kkonganti
date Sun, 28 Aug 2022 00:37:10 -0400
parents ce6d9548fe89
children
comparison
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103:96a34c382154 104:17890124001d
20 "name using the --pipeline option.\n\033[0m" + '-'.multiply(params.linewidth) + "\n") 20 "name using the --pipeline option.\n\033[0m" + '-'.multiply(params.linewidth) + "\n")
21 System.exit(1) 21 System.exit(1)
22 } 22 }
23 } 23 }
24 24
25 // Include modules' conig last. 25 // Include modules' config last.
26 includeConfig "${pd}${fs}conf${fs}logtheseparams.config" 26 includeConfig "${pd}${fs}conf${fs}logtheseparams.config"
27 includeConfig "${pd}${fs}conf${fs}modules.config" 27 includeConfig "${pd}${fs}conf${fs}modules.config"
28 28
29 // Nextflow runtime profiles 29 // Nextflow runtime profiles
30 conda.cacheDir = '/tool/tool-data/cfsan-centriflaken-db/0/kondagac_cache' 30 conda.cacheDir = '/tool/tool-data/cfsan-centriflaken-db/0/kondagac_cache'
53 process.executor = 'local' 53 process.executor = 'local'
54 process.cpus = 4 54 process.cpus = 4
55 params.enable_conda = false 55 params.enable_conda = false
56 params.enable_module = false 56 params.enable_module = false
57 singularity.enabled = true 57 singularity.enabled = true
58 singularity.autoMounts = true
58 docker.enabled = false 59 docker.enabled = false
59 } 60 }
60 61
61 raven { 62 raven {
62 process.executor = 'slurm' 63 process.executor = 'slurm'
76 process.memory = '10GB' 77 process.memory = '10GB'
77 process.cpus = 4 78 process.cpus = 4
78 params.enable_conda = false 79 params.enable_conda = false
79 params.enable_module = true 80 params.enable_module = true
80 singularity.enabled = false 81 singularity.enabled = false
82 docker.enabled = false
83 clusterOptions = '--signal B:USR2'
84 }
85
86 eprodcingularity {
87 process.executor = 'slurm'
88 process.queue = 'lowmem,midmem,bigmem'
89 process.memory = '10GB'
90 process.cpus = 4
91 params.enable_conda = false
92 params.enable_module = false
93 singularity.enabled = true
94 singularity.autoMounts = true
81 docker.enabled = false 95 docker.enabled = false
82 clusterOptions = '--signal B:USR2' 96 clusterOptions = '--signal B:USR2'
83 } 97 }
84 98
85 cingularity { 99 cingularity {