Mercurial > repos > kkonganti > cfsan_centriflaken

comparison 0.4.0/workflows/centriflaken.nf @ 104:17890124001d

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"planemo upload"
author kkonganti
date Sun, 28 Aug 2022 00:37:10 -0400
parents ce6d9548fe89
children
comparison
equal deleted inserted replaced
103:96a34c382154 104:17890124001d
122 FLYE_ASSEMBLE ( SEQKIT_GREP.out.fastx ) 122 FLYE_ASSEMBLE ( SEQKIT_GREP.out.fastx )
123 123
124 FLYE_ASSEMBLE 124 FLYE_ASSEMBLE
125 .out 125 .out
126 .assembly 126 .assembly
127 .set { ch_flye_assembly }
128
129 ch_flye_assembly
130 .map {
131 meta, fastq ->
132 meta.is_assembly = true
133 [meta, fastq]
134 }
127 .set { ch_flye_assembly } 135 .set { ch_flye_assembly }
128 136
129 ch_flye_assembly.ifEmpty { [ false, false ] } 137 ch_flye_assembly.ifEmpty { [ false, false ] }
130 138
131 KRAKEN2_CLASSIFY ( ch_flye_assembly ) 139 KRAKEN2_CLASSIFY ( ch_flye_assembly )