Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 17:1cb92deb15f8

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 19:54:23 -0400
parents 589620eec35d
children 4f31b641f6fd
comparison
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16:589620eec35d 17:1cb92deb15f8
58 <option value="kondagac">conda</option> 58 <option value="kondagac">conda</option>
59 <option value="cingularitygac">singularity</option> 59 <option value="cingularitygac">singularity</option>
60 </param> 60 </param>
61 </inputs> 61 </inputs>
62 <outputs> 62 <outputs>
63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}"> 63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="./cpipes-output/${pipeline}-multiqc/multiqc_report.html"/>
64 <discover_datasets pattern="(?P&lt;name&gt;.*)\.html" ext="html" assign_primary_output="true" directory="./cpipes-output/${pipeline}-multiqc"/> 64 <!-- <discover_datasets pattern="(?P&lt;name&gt;.*)\.html" ext="html" assign_primary_output="true" directory="./cpipes-output/${pipeline}-multiqc"/> -->
65 </data> 65 <!-- </data> -->
66 <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}"> 66 <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
67 <discover_datasets pattern="(?P&lt;designation&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" visible="true" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/> 67 <discover_datasets pattern="(?P&lt;designation&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" visible="true" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
68 </data> 68 </data>
69 </outputs> 69 </outputs>
70 <tests> 70 <tests>