Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 36:1d6557e7db72

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 19:08:47 -0400
parents 0a65e6fde7b6
children 36ca1a1156df
comparison
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35:dc9258195982 36:1d6557e7db72
79 <option value="kondagac" selected="true">conda</option> 79 <option value="kondagac" selected="true">conda</option>
80 <option value="cingularitygac">singularity</option> 80 <option value="cingularitygac">singularity</option>
81 </param> 81 </param>
82 </inputs> 82 </inputs>
83 <outputs> 83 <outputs>
84 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/> 84 <data name="multiqc_report" format="html" label="${pipeline}: MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/>
85 <collection name="assembled_mags" type="list" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}"> 85 <collection name="assembled_mags" type="list" label="${pipeline}: Assembled MAGs on ${on_string}">
86 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="kraken2_extract_contigs"/> 86 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="kraken2_extract_contigs"/>
87 </collection> 87 </collection>
88 </outputs> 88 </outputs>
89 <tests> 89 <tests>
90 <!--Test 01: long reads--> 90 <!--Test 01: long reads-->