Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 90:1e4f33f27a58

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"planemo upload"
author kkonganti
date Thu, 14 Jul 2022 11:16:01 -0400
parents 55a686167e40
children 046e57368d3b
comparison
equal deleted inserted replaced
89:55a686167e40 90:1e4f33f27a58
78 <when value="single_long"> 78 <when value="single_long">
79 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz" 79 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz"
80 label="Dataset list of unpaired short reads or long reads" /> 80 label="Dataset list of unpaired short reads or long reads" />
81 <conditional name="pipeline_cond"> 81 <conditional name="pipeline_cond">
82 <param name="pipeline" type="select" label="CPIPES Workflow name" 82 <param name="pipeline" type="select" label="CPIPES Workflow name"
83 help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for short reads (paired or unpaired). Default: centriflaken"> 83 help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for unpaired short reads. Default: centriflaken">
84 <option value="centriflaken" selected="true">centriflaken</option> 84 <option value="centriflaken" selected="true">centriflaken</option>
85 <option value="centriflaken_hy">centriflaken_hy</option> 85 <option value="centriflaken_hy">centriflaken_hy</option>
86 </param> 86 </param>
87 <when value="centriflaken"> 87 <when value="centriflaken">
88 <param name="long_read_platform" type="select" label="Mention long read sequencing platform and type"> 88 <param name="long_read_platform" type="select" label="Mention long read sequencing platform and type">
105 </when> 105 </when>
106 <when value="paired"> 106 <when value="paired">
107 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" /> 107 <param name="input_pair" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="List of Dataset pairs" />
108 <conditional name="pipeline_cond"> 108 <conditional name="pipeline_cond">
109 <param name="pipeline" type="select" label="CPIPES Workflow name" 109 <param name="pipeline" type="select" label="CPIPES Workflow name"
110 help="Auto selected centriflaken_hy for paired-end short reads."> 110 help="Auto selected centriflaken_hy workflow for paired-end short reads.">
111 <option value="centriflaken_hy" selected="true">centriflaken_hy</option> 111 <option value="centriflaken_hy" selected="true">centriflaken_hy</option>
112 </param> 112 </param>
113 <when value="centriflaken_hy"> 113 <when value="centriflaken_hy">
114 <param name="long_read_platform" value="N/A" type="text" optional="true" label="Mention long read sequencing platform and type" 114 <param name="long_read_platform" value="N/A" type="text" optional="true" label="Mention long read sequencing platform and type"
115 help="THIS OPTION IS IGNORED IF THE INPUT READS ARE SHORT READS."/> 115 help="THIS OPTION IS IGNORED IF THE INPUT READS ARE SHORT READS."/>