Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 19:2671e2d54a25

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 09:15:39 -0400
parents 4f31b641f6fd
children 91480ddc3fcd
comparison
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18:4f31b641f6fd 19:2671e2d54a25
60 </param> 60 </param>
61 </inputs> 61 </inputs>
62 <outputs> 62 <outputs>
63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="./cpipes-output/${pipeline}-multiqc/multiqc_report.html"/> 63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="./cpipes-output/${pipeline}-multiqc/multiqc_report.html"/>
64 <collection name="assembled_mags" type="list" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}"> 64 <collection name="assembled_mags" type="list" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
65 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/> 65 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
66 </collection> 66 </collection>
67 </outputs> 67 </outputs>
68 <tests> 68 <tests>
69 <!--Test 01: long reads--> 69 <!--Test 01: long reads-->
70 <test expect_num_outputs="2"> 70 <test expect_num_outputs="2">